[English/Japanese]

Nonlinear Dynamics Lab
Dept Physics
Kyoto University


Faculty of science
Bldg. No.5
Kitashirakawa-Oiwakecho,
Sakyo-ku, Kyoto,
606-8502, Japan

Access
Visitors

Analytical Toolbox

Publications
Shinomoto group / Nonlinear dynamics lab
Members
    Shigeru Shinomoto Associate Professor shinomoto[at]scphys.kyoto-u.ac.jp #434
    Tomokatsu Onaga D3 onaga[at]scphys.kyoto-u.ac.jp #411
    Kazuki Fujita M2 fujita.kazuki.37n[at]st.kyoto-u.ac.jp #402
    Tatsuya Goto M1 goto.tatsuya.33m[at]st.kyoto-u.ac.jp #407
    Yunhan Du Visiting student 2017- duyunhan_66[at]yahoo.co.jp #402


    ※[at] should be changed to “@”.
Research interests: Neural coding and computation / Seismological activity / Social communication

Research subjects: Neuronal spike trains (single/multi) / Local field potentials / Seismological data

Analytical methods: State space model / Hidden Markov model / Gaussian graphical model
Seminars
Schedule
Reading circle / Journal club
  • Reading circleTuesday  3:30pm.#412
  • Journal clubFriday 4:00pm.Kamitani Lab
Publication

Correlations and forecast of death tolls in the Syrian conflict
Kazuki Fujita, Shigeru Shinomoto and Luis E. C. Rocha, Scientific Reports (2017) 7:15737
DOI:10.1038/s41598-017-15945-x

Concurrency-induced transitions in epidemic dynamics on temporal networks.
Tomokatsu Onaga, James P. Gleeson, and Naoki Masuda, Physical Review Letters (2017) 119,108301

Inferring objects from a multitude of oscillations.
M. Furukawa and S. Shinomoto, Neural Computing and Applications (2017) 1-8.
DOI:10.1007/s00521-016-2752-3

Emergence of event cascades in inhomogeneous networks
T. Onaga, S. Shinomoto, Scientific Reports (2016) 6:33321.
DOI:10.1038/srep33321

Similarity in neuronal firing regimes across mammalian species.
Y. Mochizuki, T. Onaga, H. Shimazaki, T. Shimokawa, Y. Tsubo, R. Kimura, A. Saiki, Y. Sakai, Y. Isomura, S. Fujisawa, K. Shibata, D. Hirai, T. Furuta, T. Kaneko, S. Takahashi, T. Nakazono, S. Ishino, Y. Sakurai, T. Kitsukawa, J.W. Lee, H. Lee, M.W. Jung, C. Babul, P.E. Maldonado, K. Takahashi, F.I. Arce-McShane, C.F. Ross, B.J. Sessle, N.G. Hatsopoulos, T. Brochier, A. Riehle, P. Chorley, S. Gruen, H. Nishijo, S. Ichihara-Takeda, S. Funahashi, K. Shima, H. Mushiake, Y. Yamane, H. Tamura, I. Fujita, N. Inaba, K. Kawano, S. Kurkin, K. Fukushima, K. Kurata, M. Taira, K. Tsutsui, T. Ogawa, H. Komatsu, K. Koida, K. Toyama, B.J. Richmond, and S. Shinomoto, Journal of Neuroscience (2016) 36:5736-5747.

Efficient information transfer by Poisson neurons.
L. Kostal and S. Shinomoto, Math Biosci Eng (2016) 13:506-520

Microscopic instability in recurrent neural networks.
Y. Yamanaka, S. Amari and S. Shinomoto, Physical Review E (2015) 91:032921.

Estimation of Neuronal Firing Rate.
S. Shinomoto, Encyclopedia of Computational Neuroscience (Springer 2014)
DOI: 10.1007/978-1-4614-7320-6_392-5

Bursting transition in a linear self-exciting point process.
T. Onaga and S. Shinomoto, Physical Review E (2014) 89:042817.

Analog and digital codes in the brain.
Y. Mochizuki and S. Shinomoto, Physical Review E (2014) 89:022705.

Estimating nonstationary inputs from a single spike train based on a neuron model with adaptation.
H. Kim and S. Shinomoto, Mathematical Biosciences and Engineering (2014) 11: 49-62.

Information transmission using non-Poisson regular firing.
S. Koyama, T. Omi, R.E. Kass, and S. Shinomoto, Neural Computation (2013) 25:854-876.

Estimating nonstationary input signals from a single neuronal spike train.
H. Kim and S. Shinomoto, Physical Review E (2012) 86:051903.

Detection limit for rate fluctuations in inhomogeneous Poisson processes.
T. Shintani and S. Shinomoto Physical Review E (2012) 85:041139.

Estimating time-varying input signals and ion channel states from a single voltage trace of a neuron.
R. Kobayashi, Y. Tsubo, P. Lansky, and S. Shinomoto, Advances in NIPS (2012) 24: 217-225.

All papers Presentations
Alumni
  • Masahiro Furukawa    (Industrial Growth Platform, Inc.)
  • Kazuki Yoshida    (Industrial Growth Platform, Inc.)
  • Toshiaki Shintani    (Research Institute of Systems Planning, Inc.)
  • Yasuhiro Mochizuki    (Riken BSI)
  • Yuzuru Yamanaka
  • Shuhei Kurita    (Kyoto University)
  • Hideaki Kim    (NTT Research Institute)
  • Satoshi Yamauchi    (Yahoo)
  • Takahiro Omi    (The University of Tokyo)
  • Shigefumi Hata    (Kagoshima University)
  • Nanae (Matsuno) Okubo
  • Yuichiro Sakamoto    (Acroquest Technology)
  • Takeaki Shimokawa    (Advanced Telecommunications Research Institute)
  • Ryota Kobayashi    (National Institute of Informatics)
  • Kensuke Arai    (Carnegie Mellon University)
  • Hideaki Shimazaki    (Kyoto University)
  • Takaaki Aoki    (Kagawa University)
  • Shinsuke Koyama    (The Institute of Statistical Mathematics)
  • Yoichi Miyazaki    (Microsoft)
  • Keiji Miura    (Kwansei Gakuin University)
  • Yutaka Obuchi    
  • Masao Goto    (Japan Patent Office)
  • Tohru Sasaki    (NTT DATA Corporation)
  • Hideaki Ishibashi    
  • Kazunori Hashida    (Meiji Yasuda Life Insurance Company)
  • Yasuhiro Tsubo    (Ritsumeikan University)
  • Yutaka Sakai    (Tamagawa University)
  • Kenichi Kurasawa    (Nomura Securities Co., Ltd.)
  • Koji Takamura    (Nomura Research Institute)
  • Yoshiyuki Kabashima    (Tokyo Institute of Technology)

Affiliations are not necessarily the latest.

Visiting professors/Posdocs/Visiting students
  • Rik Voorhaar (Visiting Student 2014)
  • Guido Baardink (Visiting Student 2014)
  • Jinfeng Xiao (Visiting Student 2013)
  • Hang Yu (Visiting Student 2012)
  • Xiaoxue Zhao (Visiting Student 2009)
  • Axel Rossberg (Postdoctoral Fellow 1999 - 2000)
  • Battogtokh Dorjsuren (Postdoctoral Fellow 1997 - 1999)
  • Philippe Marcq (Postdoctoral Fellow 1996 - 1998)
  • Prabodh Shukla (Visiting Professor 1996)
  • Christian Kurrer (Post Doctoral Fellow 1994 - 1995)
  • Seung Kee Han (Visiting Professor 1994 - 1995)
  • Michael Crair (Post Doctoral Fellow 1992 - 1993)
  • Eric Sulpice (Post Doctoral Fellow 1988 - 1990)
  • Edgar Knobloch (Visiting Professor 1987 - 1988)

Contact: Kazuki Yoshida, email: kazuki.yoshida0602 at scphys.kyoto-u.ac.jp